Where Science Meets Precision
We are a boutique Contract Research Organization (CRO) specializing in spatial and single-cell applications delivering hands-on expertise to drive your multi-omic research forward.
The 3D Genomics Difference
Our spatial and single-cell transcriptomics services give you the tools to explore gene expression with unprecedented detail—cell by cell, tissue by tissue. From experimental planning to data analysis, we’re here to help you uncover the patterns, pathways, and possibilities that drive your research forward.
Multi-omic Expertise
At the forefront of discovery, our boutique CRO combines broad multi-omics expertise with advanced spatial and single-cell technologies to deliver seamless, end-to-end project support, from pilot studies to large-scale research programs.
Your research goals are our CRO’s mission, guiding every decision we make ensuring targeted, high-quality outcomes. With expert-driven support and a commitment to scientific excellence, we provide a research experience built around your success.
Accelerated Results, Personalized Support
Our boutique CRO provides streamlined processes and an expert team to ensure your multi-omic research progresses without delay.
Our CRO aligns our operations with your project goals, offering dedicated support and flexible timelines to meet your research milestones efficiently.
Tailored Precision
Your science deserves more than service — it demands precision and expertise. At 3D Genomics, our boutique CRO delivers tailored solutions from sample preparation to sequencing, ensuring your research is always in expert hands.
With expert driven support and a commitment to scientific precision, we provide a research experience built around your success.
Your Research, Our Expertise.
Spatial Transcriptomics
At 3D Genomics, our spatial transcriptomics services combine gene expression with tissue context, giving you a detailed map of biology in action. From preserving tissue architecture to delivering high-quality spatial data and analysis, we help you uncover how cells interact, organize, and function—right where it matters. Whether you’re exploring cancer microenvironments, neuroscience, or developmental biology, we’re here to bring your questions into focus.
Single-Cell Transcriptomics
At 3D Genomics, we specialize in high-resolution single-cell transcriptomics, helping researchers unravel the complexity of gene expression one cell at a time. Our expert team offers end-to-end services—from sample prep and library construction to sequencing and bioinformatic analysis—empowering you with the data you need to drive meaningful discoveries. With precision, flexibility, and deep scientific insight, we’re here to support your breakthroughs at every step.
How to Work With Us
Precise Spatial Transcriptomics
You provide us with FFPE samples or frozen tissue. Depending on your needs, we can provide you with tissue fixation, H&E staining, tissue selection, CytAssist transfer, spatial library preparation, sequencing, or bioinformatics.
Single-Cell RNA Sequencing Services
You provide us with tissue samples or single-cell suspensions. Depending on your specific needs, we can provide you with raw sequencing files (FASTQ), 10X CellRanger, BAM files, and computational support.
Customer testimonials
Ready to move your spatial and single cell research forward?
Partner with 3D Genomics for high-resolution spatial and single-cell transcriptomics services that move your research forward.
