Call us at +1-760-603-0276 to discuss your project

3D Genomics.
3D Genomics.
  • Home
  • Services
  • Applications
  • About Us
  • Careers
  • Contact Us
  • More
    • Home
    • Services
    • Applications
    • About Us
    • Careers
    • Contact Us
  • Home
  • Services
  • Applications
  • About Us
  • Careers
  • Contact Us

Our services

Spatial Transcriptomics

Single-cell/Single-nuclei RNAseq

Single-cell/Single-nuclei RNAseq

 We use the Visium spatial gene expression technology from 10X Genomics. We work with fresh frozen tissue or FFPE samples. We cut sections, produce H&E images and spatial libraries and sequence to the desired read depth. We map the reads to the target genome and conduct basic QC and cluster analysis using SpaceRanger, Loupe Browser and Seurat. All data are property of the client. All unused materials are returned to client.   

Learn more

Single-cell/Single-nuclei RNAseq

Single-cell/Single-nuclei RNAseq

Single-cell/Single-nuclei RNAseq

We can obtain single nuclei gene expression data from serial sections of the tissue blocks used for spatial transcriptomics. Spatial and single nuclei gene expression are integrated using Seurat and similar tools.


We also provide standalone single cell gene expression services (without Visium). We work with frozen cells provided by the client, and also established custom cell culture models for client drug response studies and collected functional data, image data, and/or molecular data in addition to the single cell RNAseq data.

Learn more

Related services

Confocal Imaging

FACS isolation of Cell Subsets

FACS isolation of Cell Subsets

  • Biomarker imaging for spatial multiomics
  • Proteomic vaildation of spatially distinct cell states

FACS isolation of Cell Subsets

FACS isolation of Cell Subsets

FACS isolation of Cell Subsets

  • Bulk cell enrichment by magnetic bead isolation
  • Antibody specific cell type isolation by FACS

Single Cell Immune Profiling

FACS isolation of Cell Subsets

Single Cell Immune Profiling

  • Comprehensive Immune Profiling
  • BCR/TCR profiling
  • Antigen specific TCR clonotype profiling with dCode dextramers

In-Depth Bioinformatics

In-Depth Bioinformatics

Single Cell Immune Profiling

  • Detailed informatics and data visualization
  • Data integration for multiomics
  • Custom analysis workflows

High Content Imaging

In-Depth Bioinformatics

Custom Assay Development

  • High Content Analysis/Screening
  • 2D, co-culture, 3D imaging
  • Drug response HCS
  • Cell Painting assay

Custom Assay Development

In-Depth Bioinformatics

Custom Assay Development

  • Compound validation assays
  • Complex dosing schemes
  • Full gamut of phenotypic and molecular readouts

What people say

  • Home
  • Services
  • Applications
  • Single-cell/nuclei RNAseq
  • Spatial Transcriptomics
  • About Us
  • Careers
  • Contact Us
  • Privacy Policy

3D Genomics, Inc.

2736 Loker Avenue W., Ste B, Carlsbad, CA 92010

+1-760-603-0276

Copyright © 2022 Three Dimension Genomics, Inc. - All Rights Reserved.

This website uses cookies.

We use cookies to analyze website traffic and optimize your website experience. By accepting our use of cookies, your data will be aggregated with all other user data.

Accept